PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000196-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 327aa    MW: 37073.9 Da    PI: 4.4264
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000196-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1982135356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t++q++ Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PSME_00000196-RA  82 KKRRLTADQVQFLERSFEIENKLEPERKIKLANELGLQPRQVAVWFQNRRARWK 135
                       56789************************************************9 PP
2HD-ZIP_I/II130.47.2e-4281172192
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       ekkrrl+++qv++LE+sFe e+kLeperK +la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk+++++l+ + ++L ke+++Lr+e++
  PSME_00000196-RA  81 EKKRRLTADQVQFLERSFEIENKLEPERKIKLANELGLQPRQVAVWFQNRRARWKTKQLERDYDILKSRFESLRVDYDSLLKEKDNLRAEVT 172
                       69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-2068139IPR009057Homeodomain-like
PROSITE profilePS5007117.60577137IPR001356Homeobox domain
SMARTSM003892.1E-1980141IPR001356Homeobox domain
PfamPF000469.2E-1782135IPR001356Homeobox domain
CDDcd000865.06E-1982138No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2083144IPR009057Homeodomain-like
PRINTSPR000312.7E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000312.7E-5117133IPR000047Helix-turn-helix motif
PfamPF021831.6E-16137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MMMSGGRMYG GPNVLLMGNE SISRSADALD ALLSSSVFNG SRSVANLEEV IGNVSKRPFY  60
NSFDQEETGD EDLDDCSHPP EKKRRLTADQ VQFLERSFEI ENKLEPERKI KLANELGLQP  120
RQVAVWFQNR RARWKTKQLE RDYDILKSRF ESLRVDYDSL LKEKDNLRAE VTFLTGKLHS  180
KDCDLEAQTK DSESVEKKVF LQPVSHSECV GMSERGTSVN DPPPSCKHED PLSSGTDSSG  240
VLDEGSPHHI DCGHSSNHVN SSQLFEADQS DLSHAEEEEE EEGMSEKLLP QTYTYHLLKV  300
EDGPFPDASY NEMFAMEDQV QLDSWWD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129137RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1234850.0BT123485.1 Picea sitchensis clone WS04713_N08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5AB830.0D5AB83_PICSI; Uncharacterized protein
STRINGAquca_002_00482.11e-83(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-52homeobox 1