PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000216-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 689aa    MW: 79637 Da    PI: 7.1792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000216-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.4e-09209253554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR ++++ f+ L +llP++      K +K ++L  + +Y+++L
  PSME_00000216-RA 209 HMIAERNRRIKLKQHFSLLHSLLPHN-----SKRDKYSVLSNTLRYMSEL 253
                       7899*********************8.....6***************998 PP
2HLH25.23e-08506550554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR ++++ f+ L +llP +      K +K ++L  + +Y+++L
  PSME_00000216-RA 506 HMIAERNRRFKLKHHFSSLHSLLPLN-----SKRDKYSVLSNTFKYLSEL 550
                       7899*********************8.....6***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.354204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13204273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-11208270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-6208257No hitNo description
PfamPF000102.2E-6209253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-7210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.792501550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-13504570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.06E-7505554No hitNo description
Gene3DG3DSA:4.10.280.102.2E-10505569IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-6506550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-7507556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
DMINTFRSMA DPVFQNPKME IVAASALEGG FNGSPVFPGA YMMASSASGM MIQPNVQNSA  60
TRNINVDSMS IVDEMSIVDE AHFELPHYST TETSWYSSSS EDVEAFYKFE HCNISQGHSH  120
PQSFNVANNL MSVPHSSMLY RQSAFMPYLR STPSLYVKSG RHNLMKRSLK FLRKIDEKRR  180
EAQRLSQAAN TEEQLAFNAS LQNKAAFHHM IAERNRRIKL KQHFSLLHSL LPHNSKRDKY  240
SVLSNTLRYM SELKRRVDEL EQRNRALEES WRINISKEED CSSFDQKHEE HETTLVYTSD  300
EVVLRQSKNM PDQLDMRLNV QIDTLSSPTN LTIVLLERLR ELQLEVVSVH VSGMMIQPDG  360
QNSVTGSINA DSMSIIDQVH SELLPLYSTT ETSWYSSSSE DMEALYQLDH CNISNSHSLI  420
PQSFNVANNM IMSAPQNSTL YRQSAFGSYL RPYTHSLFVK NDRENLTKRC FKFLKKIEAQ  480
RLSQVAKIQE QHEFNASLQD KAAFHHMIAE RNRRFKLKHH FSSLHSLLPL NSKRDKYSVL  540
SNTFKYLSEL KHRVDELEQI NRALEESLRI NISEKHGRDS FDQRHEEHQA TLVYKSDEVV  600
LEQSKNMPNQ VDMRINVQID PLSSPTNLII LVLERLRELQ LEVVSVQSNV QPFNLEIHLI  660
LTQIKGDQWE SYKWKNIAEV VRRTFSVSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-09bHLH family protein