PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00000342-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 227aa MW: 25121.1 Da PI: 7.8732

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00000342-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.6	2e-31	73	131	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers+ +p++++itY+++Hnh+ PSME_00000342-RA 73 SDSWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSRAEPSMLIITYTSDHNHP 131 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.9E-32	67	131	IPR003657	WRKY domain
PROSITE profile	PS50811	30.699	67	133	IPR003657	WRKY domain
SuperFamily	SSF118290	3.79E-26	70	131	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	72	132	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	74	131	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MLKSECLSFH SLPDFSSSKY FNSSKQESGT EPDLSKQQAQ LLNNMRTGSK RRKTVETRVI 60 SVPAGEAASG PPSDSWAWRK YGQKPIKGSP YPRSYYRCSS SKGCSARKQV ERSRAEPSML 120 IITYTSDHNH PPAVNNKKLP EAASDAKIHC TNISRRDKQT VMNPLLSSAI MESPVMNLLG 180 EAAGAERADL CISRSEIEED EEDLFSGLGE LPESSAIFFS RGFFDES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	58	131	7	77	Disease resistance protein RRS1
5w3x_D	1e-20	58	131	7	77	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007211770.1	8e-49	probable WRKY transcription factor 65
TrEMBL	A0A0D6R4G3	6e-51	A0A0D6R4G3_ARACU; Uncharacterized protein
STRING	EMJ12969	3e-48	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	6e-30	WRKY DNA-binding protein 65