PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000455-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NF-YA
Protein Properties Length: 139aa    MW: 16047.5 Da    PI: 10.9097
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000455-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA26.71.8e-084072538
         CBFB_NFYA  5 YVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38
                      +VNaKQ + IlkRR++R k ee++k  + ++k +
  PSME_00000455-RA 40 WVNAKQSRCILKRRAARLKWEETRKK-QFQKKTI 72
                      7*********************8886.4444443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF020452.4E-64072IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
METHLTSHMK MGLDVPVPDE TNHLDQVKIA SLSRTGKWAW VNAKQSRCIL KRRAARLKWE  60
ETRKKQFQKK TILALRNKQS NKSFLQGCGS NRGKSNTDPP LYSSTSTPLT WSSALYVQEL  120
LNAKRRLEIL EVKEQERKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-