PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000604-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 359aa    MW: 39938.6 Da    PI: 7.296
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000604-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-18210264256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  PSME_00000604-RA 210 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTK 264
                       788899***********************************************98 PP
2HD-ZIP_I/II1231.4e-39210299191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlskeq++lLEesF+e+++L+p++K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++eveeLr ++
  PSME_00000604-RA 210 RKKLRLSKEQSALLEESFREHHTLNPKQKNALAKRLNLKSRQVEVWFQNRRARTKLKQTEVDCEVLKRCCETLTEENRRLQREVEELR-AI 299
                       69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-18196265IPR009057Homeodomain-like
SuperFamilySSF466891.8E-18197267IPR009057Homeodomain-like
PROSITE profilePS5007117.119206266IPR001356Homeobox domain
SMARTSM003894.4E-15208270IPR001356Homeobox domain
CDDcd000863.50E-16209267No hitNo description
PfamPF000461.3E-15210264IPR001356Homeobox domain
PROSITE patternPS000270241264IPR017970Homeobox, conserved site
PfamPF021832.2E-11266299IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.7E-22266309IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
GYSRERALSA GAVPGKHIGH LPAAIRDLTE YTGVYTSYIR LHGQEPSRIY THNMFLSRRR  60
DINFVSEKQE GHEEYLSVDL TMAVSAGPGI THSHGSEVGA AQLADTSSSQ TAGSLRNFDM  120
NRLPSGTDEE GGGGTSSAVS TVSPFLSDIV VRYGEKNNGT WDGEVNERTH YQDQGIYNQN  180
TDSLRNIAIN CEEDEGDHVS AGGDGSPPPR KKLRLSKEQS ALLEESFREH HTLNPKQKNA  240
LAKRLNLKSR QVEVWFQNRR ARTKLKQTEV DCEVLKRCCE TLTEENRRLQ REVEELRAIK  300
VVPPCVIAQD FYMPLPAATL TMCPSCERVG SSIDMKKSAL TFAKPSYYLT NFRQPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258266RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1134930.0BT113493.1 Picea glauca clone GQ03410_M22 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974113.21e-79homeobox-leucine zipper protein HOX19
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-61homeobox from Arabidopsis thaliana