PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00000850-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 295aa    MW: 33008.1 Da    PI: 7.628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00000850-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14126172251
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaark 51 
                       +y+G r ++ +g+++A Ird    g + +r++lg+f  aeeAa a+++a++
  PSME_00000850-RA 126 RYRGLRKRP-WGKFAAKIRDS---GrRGARVWLGTFKMAEEAAMAYDKAAL 172
                       8********.**********4...5444*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-22125185No hitNo description
SMARTSM003807.7E-25126190IPR001471AP2/ERF domain
PfamPF008471.0E-9126172IPR001471AP2/ERF domain
PROSITE profilePS5103220.231126184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-25126185IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-18126186IPR016177DNA-binding domain
PRINTSPR003672.2E-9127138IPR001471AP2/ERF domain
PRINTSPR003672.2E-9150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MALETASPNN AEGSYQHEHG PVVSAERLLE DVWAHFIAAR KSDQPIHDGL QPANHTKEES  60
CCNVEDQDQD QLLNEPAANL GWIAIHNQQQ MAIPGATGST AYTPAICNTK MTRAQGEAAE  120
KPSTKRYRGL RKRPWGKFAA KIRDSGRRGA RVWLGTFKMA EEAAMAYDKA ALLNRETWAS  180
LNFPIEAVTN TLADTTEKWS SKLISSRQKQ KQKQKHIKVS HHHIELRKKM DAPYAGSTIG  240
VDFSKDDGMS SMSQKIRINE EAPKDHDDEK CKESPKVMMM CPKDHDGEKC EEALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21125185161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.19e-18ethylene-responsive element binding factor 15