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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PSME_00000947-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family |
LFY |
| Protein Properties |
Length: 414aa MW: 47675.1 Da PI: 7.5761 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PSME_00000947-RA | genome | PRS | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 576.3 | 7.9e-176 | 14 | 413 | 1 | 386 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapp..arlleeaavseapleaaaaaaark.lreleelfkayGvryltvakiaelGftvstLvdmkdeelddlm 90
md+e+f++ +f+wd+r+aa+ ++ +++++++ + +ple ++ rk l++le+lf++yGvry+t+ak++e+Gft++tLv+m++ee++dlm
PSME_00000947-RA 14 MDAENFPVGFFRWDQRPAATVAAatTTVFNKD--HGRPLEIILPMNGRKeLKSLEDLFREYGVRYSTLAKMTEMGFTANTLVNMTEEEIEDLM 104
9*************887775544115555554..5677788899998888******************************************* PP
FLO_LFY 91 kslseifrldllvGeryGikaavraerrrlee..........eeaekkrrkllsedeetaldalsqeglseepvqe..eke.aagsggeglge 170
k+l+ei+++dll+GeryGik+a+rae++rl++ +e ++r+++l++d++t al++eg+s+e + + ++ +++s+++ ++
PSME_00000947-RA 105 KTLIEIYHMDLLIGERYGIKSAIRAEKKRLQDslemqrleilSE--AERKRILHDDQNTFAAALASEGTSKELRGNdpLIFpESTSADHAPMN 195
********************************999999987544..55555799******************999855334455665544444 PP
FLO_LFY 171 aelvaaeekkseeekkkaskkkqkrk..kkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCre 261
++ + ++ +++++ + + ++++++ e++ d+++++ + +++ gedge+r+rehPfivtepge+argkknGLDYLfdLyeqC++
PSME_00000947-RA 196 IASCKDSTLILQNSNQAQFCSSGLIGmpEHSSESDERKADTNKQKRRRSKEPGEDGEDRPREHPFIVTEPGELARGKKNGLDYLFDLYEQCGK 288
4444333333333333332222222200222222334555566666677789***************************************** PP
FLO_LFY 262 fLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwd 354
fLl+vq+iake+GekcPtkvtnqvfr+ak++ga+yinkPkmrhYvhCYalhcLd+e+sn+lrr +kergenvGawrqacy+plvaia++++wd
PSME_00000947-RA 289 FLLEVQRIAKEKGEKCPTKVTNQVFRHAKHNGAVYINKPKMRHYVHCYALHCLDSEQSNHLRRIYKERGENVGAWRQACYYPLVAIARENNWD 381
********************************************************************************************* PP
FLO_LFY 355 idavfnahprLsiWYvPtkLrqLChlerskas 386
i+++fn++++L+iWYvPtkLrqLCh+ersk++
PSME_00000947-RA 382 IEGIFNRNEKLKIWYVPTKLRQLCHMERSKEC 413
*****************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MVKSALHSTS ETNMDAENFP VGFFRWDQRP AATVAAATTT VFNKDHGRPL EIILPMNGRK 60
ELKSLEDLFR EYGVRYSTLA KMTEMGFTAN TLVNMTEEEI EDLMKTLIEI YHMDLLIGER 120
YGIKSAIRAE KKRLQDSLEM QRLEILSEAE RKRILHDDQN TFAAALASEG TSKELRGNDP 180
LIFPESTSAD HAPMNIASCK DSTLILQNSN QAQFCSSGLI GMPEHSSESD ERKADTNKQK 240
RRRSKEPGED GEDRPREHPF IVTEPGELAR GKKNGLDYLF DLYEQCGKFL LEVQRIAKEK 300
GEKCPTKVTN QVFRHAKHNG AVYINKPKMR HYVHCYALHC LDSEQSNHLR RIYKERGENV 360
GAWRQACYYP LVAIARENNW DIEGIFNRNE KLKIWYVPTK LRQLCHMERS KECQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | PRU76757 | 0.0 | U76757.1 Pinus radiata FLORICAULA/LEAFY-like protein (NEEDLY) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 1e-112 | floral meristem identity control protein LEAFY (LFY) |
