PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00001310-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 273aa MW: 31351.4 Da PI: 9.738

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00001310-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.4	0.00061	238	268	20	55
HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 20 feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + L++l+ + +K + a++L +A+ YIksLq PSME_00001310-RA 238 ITALQQLVSPF-----GKTDTASVLCEAIVYIKSLQ 268 66777777776.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.648	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-7	231	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-7	232	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
LAQVIQSVSY ADRRYSMILL EGQEKEALQR YGKAPDRRTG QHLSGRNFVF CQRRHTGSVT 60 ETTSITCYCF KPLELRFFWV FYGGNPRLRP KNKSDIRLDL PKPHFDIGSV KQEFNMSYDN 120 PRVDAPRTVV SQGFRSDPCN NEDLLHILLK QPSNSTDRAS PLQYHLAQFL QEGKQLNNTA 180 QSLNMPHSDE ARDAINDAKR SSPNSNSSYS IFKRPRLENS NSTLPTFKVW KEKLEYRITA 240 LQQLVSPFGK TDTASVLCEA IVYIKSLQEQ VQR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05170.1	4e-21	bHLH family protein