PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001482-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 371aa    MW: 41614.4 Da    PI: 6.9797
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001482-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-153784148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++lvd +   G  +W+ +++  g+ R++k+c++rw +yl
  PSME_00001482-RA 37 KGPWTAEEDKKLVDFILNNGHCCWRVVPKLAGLLRCGKSCRLRWTNYL 84
                      79******************************99************97 PP
2Myb_DNA-binding46.68.1e-1590134147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg  +  E++l+ +++ +lG++ W++Ia +++ gRt++++k++w+++
  PSME_00001482-RA  90 RGELSNTEEQLIMELHGKLGNR-WAKIATYLP-GRTDNEIKNYWNTH 134
                       5677889***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-212887IPR009057Homeodomain-like
PROSITE profilePS5129413.2773284IPR017930Myb domain
SuperFamilySSF466895.24E-2734131IPR009057Homeodomain-like
SMARTSM007172.4E-113686IPR001005SANT/Myb domain
PfamPF002496.9E-143784IPR001005SANT/Myb domain
CDDcd001671.01E-83984No hitNo description
PROSITE profilePS5129426.37385139IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2488139IPR009057Homeodomain-like
SMARTSM007174.5E-1489137IPR001005SANT/Myb domain
PfamPF002497.8E-1490134IPR001005SANT/Myb domain
CDDcd001674.13E-1094135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQNPAPARSK NRPRDAAKAF IISMGRKPCC DKVGLKKGPW TAEEDKKLVD FILNNGHCCW  60
RVVPKLAGLL RCGKSCRLRW TNYLRPDLKR GELSNTEEQL IMELHGKLGN RWAKIATYLP  120
GRTDNEIKNY WNTHIKKKLR RMGIDPLTHQ PIADSQSSAQ LNRLPRAVEN NEAKGAVEPK  180
RVAEALQRFE PGPKRFKEVV LSVSTNQAEP DEKIIDSLDQ PIHSVFGVHS ASMFVEDIKG  240
SNPGSSTIDR EKTFSEYLGP EVGSENTLLF HPQDDVPSVL LQGDDNFMWE LGDFVGCFAK  300
KNPTAMGSFY DGAFNMDMMA AGSILAPVEM NCRPWEHGMD PFLEWEGTDV RSHEQAFCTE  360
LQGLAATLDS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28351395108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022728015.14e-80protein ODORANT1-like
TrEMBLA0A222UBG81e-109A0A222UBG8_GINBI; R2R3MYB13
STRINGXP_010470497.12e-78(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-80myb domain protein 43