PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bZIP
Protein Properties Length: 134aa    MW: 15687.1 Da    PI: 5.0941
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_119.91.6e-06851232260
                       HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  22 qRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                       +RK +++e+Le +  eL++eN+ L k + ++k+ev+  k
  PSME_00001522-RA  85 ERKNQRLENLEIRLRELQKENHGLMKDVAKMKQEVEDQK 123
                       6*********************99999999999999655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-485122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAKLSSTGFF VLLSMMVIGT IIYLRLWTVE ADIDITDTRI DRLMFEQAQS EALDEAASWR  60
KKYDEEVENS SEHLQKLVEV TQTLERKNQR LENLEIRLRE LQKENHGLMK DVAKMKQEVE  120
DQKLKCARTG IKEV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0853021e-148EF085302.1 Picea sitchensis clone WS02724_M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVE81e-80A9NVE8_PICSI; Uncharacterized protein