PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001523-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family BES1
Protein Properties Length: 323aa    MW: 34982.1 Da    PI: 9.0325
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001523-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221264.6e-3923111795
            DUF822   7 ptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                        ++ E+E++k+RER+RR i++ki+ GLR++G+y+lp raD+n+Vl+AL++eAGw+ve+DGttyr++  p+++ ++     ++++  +++
  PSME_00001523-RA  23 SSASEKEKTKLRERHRRSITTKIFNGLRKYGGYNLPPRADINDVLRALANEAGWIVEPDGTTYRAQGMPQTSGNHSMPPMQQTTVMKTS 111
                       5678************************************************************7777774444443333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.6E-3524114IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKESSSHEAH SREGEQKQLK PKSSASEKEK TKLRERHRRS ITTKIFNGLR KYGGYNLPPR  60
ADINDVLRAL ANEAGWIVEP DGTTYRAQGM PQTSGNHSMP PMQQTTVMKT SLTPTSSFGG  120
GASMGGFNCP ITGIITENID MTGGDCSTTA SPRHMGIQQP SNNSSLSLLP SSGLSSPFAS  180
PASSDGAQGQ LATSFFPGMT GGYLPTSGRE REVSLMKDDV SAYFSADTLE AREFMTSRDT  240
LEAREFMTSR DTIDSRELLM GRNNIMPNSN ILNYANLSGV RYGMRSTLPS IMMLSNQHPF  300
LQEARASNQN TPIGSPQRHG GAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-114091391442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-114091391442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-114091391442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-114091391442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1093440.0BT109344.1 Picea glauca clone GQ03207_G04 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024391347.11e-80protein BZR1 homolog 4-like isoform X2
STRINGPP1S70_273V6.15e-78(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.11e-22beta-amylase 7