PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001545-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 463aa    MW: 50714.4 Da    PI: 6.1318
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001545-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY43.46.6e-14309351259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s+fpr               vers+edp +v++tYeg+H h+
  PSME_00001545-RA 309 EDGYRWRKYGQKAVKNSPFPR---------------VERSSEDPGIVITTYEGQHSHP 351
                       8*******************8...............9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-17293353IPR003657WRKY domain
SuperFamilySSF1182903.14E-16300353IPR003657WRKY domain
PROSITE profilePS5081118.82303353IPR003657WRKY domain
SMARTSM007747.7E-21308352IPR003657WRKY domain
PfamPF031064.2E-7309329IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MIGELIDMTI VFIENLVEED LWNKAMAGKQ KKSESIGQEC NMDSIWKLST GETPSTAIRS  60
KVRDPKEEND HNQDSTTSNP VMNSPPSHGV FGELGWNMDT DFLDRHVQPT SEGGMGSRIN  120
SGLMTDVDDF SGFESPYMSF TQCLQAGLQM GEADYSALSK SLACGELGDQ QQQSEFLEYD  180
KEVKVQPSHS ICNSQNPSAI QLRPFIAEAQ VGGRSGETST VPGTPNSSIS SSSSEGHELE  240
QSSFVAPSVT TSSTAAKGQG PANPESQPDL IAAEKPSLDS KKPPRKKGQK RNREPRFAFM  300
TKSDVDHLED GYRWRKYGQK AVKNSPFPRV ERSSEDPGIV ITTYEGQHSH PSPAILRGSA  360
ESQSHFSDQR LTSPFTQTPL IRFPSHPMIM SGTNQVPAAS PSCTNNLHHL GSIKSCMNPH  420
LPHQSRHGPQ PHPAHLMPTN ISQQPLIDHG LLEDIVPPGM RKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-143013541078Probable WRKY transcription factor 4
2lex_A1e-143013541078Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1025540.0BT102554.1 Picea glauca clone GQ0196_H01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QVU58e-98A0A0D6QVU5_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-33WRKY DNA-binding protein 71