PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001674-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 863aa    MW: 95633.1 Da    PI: 6.3442
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001674-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.64.4e-21195247255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +r++Wtp+LH++F++ v++     k +Pk+il++m+v+gLt+e+v+SHLQkYRl
  PSME_00001674-RA 195 ARVNWTPQLHQQFLKGVNES-RLYKVVPKKILKTMNVPGLTREKVASHLQKYRL 247
                       79***************987.779*****************************8 PP
2G2-like772.5e-24558610255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +r++Wtp+LH+ F++av++  G +k +Pk+il++m+v+gLt+e+v+SHLQkYRl
  PSME_00001674-RA 558 ARVNWTPQLHQLFLKAVNES-GLDKVVPKKILKTMNVPGLTRENVASHLQKYRL 610
                       79*****************9.********************************8 PP
3Response_reg49.32.8e-17311391109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedaleal 90 
                       vl+vd +   + +l+++l++ +y +v++ ++ ++a+ l+ e++  +D+++  + +pg dG++ll          lp+i+ + +ge + + + +
  PSME_00001674-RA  31 VLVVDGDTHCLAALERMLRQCDY-KVTTSTSVSQAISLVMENKgsFDIVISEVYLPGEDGFKLLDVVgVG--LGLPVIMTSVNGETNVVMRGI 120
                       89*********************.***************888888*******************998444..56******************* PP

                       HTTESEEEESS--HHHHHH CS
      Response_reg  91 kaGakdflsKpfdpeelvk 109
                        +Ga  +l Kp+  eel++
  PSME_00001674-RA 121 TRGACNYLIKPIRLEELRN 139
                       ****************987 PP
4Response_reg295.3e-114005021109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHH.HHHTTTSEEEEEESTTTHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkei.reeepklpiivvtahgeeedaleal 90 
                       vl+vd + l + +l+++l++ +y +v++ ++ ++a+ l+ e++  +D+++  + +pg dG++ll          lp+i      + + + + +
  PSME_00001674-RA 400 VLVVDGDTLCLAALERMLRQCDY-KVTTSTSVSQAISLVMENKgsFDIVMSEVYLPGEDGFKLLDVVgVG--LGLPVI------KTNVVMRGI 483
                       89*********************.***************888888*******************988444..458988......45689999* PP

                       HTTESEEEESS--HHHHHH CS
      Response_reg  91 kaGakdflsKpfdpeelvk 109
                        +Ga  +l Kp+  eel++
  PSME_00001674-RA 484 TRGACNYLIKPIRLEELRN 502
                       ************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.55E-2727155IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-2828154No hitNo description
SMARTSM004487.1E-1829141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.31430145IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.0E-1531139IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.35E-1632145No hitNo description
SuperFamilySSF466897.7E-16192251IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-22193252IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-18195247IPR006447Myb domain, plants
SuperFamilySSF521727.97E-22396518IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-21397516No hitNo description
SMARTSM004481.5E-8398504IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011024.424399508IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-9400502IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.33E-12401508No hitNo description
PROSITE profilePS512949.007554613IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-26556615IPR009057Homeodomain-like
SuperFamilySSF466894.84E-18556614IPR009057Homeodomain-like
TIGRFAMsTIGR015575.0E-22558610IPR006447Myb domain, plants
PfamPF002493.0E-8559609IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    Send to blast
MAEDHDHEKK KSMNGLAAID EDTFSPTGLH VLVVDGDTHC LAALERMLRQ CDYKVTTSTS  60
VSQAISLVME NKGSFDIVIS EVYLPGEDGF KLLDVVGVGL GLPVIMTSVN GETNVVMRGI  120
TRGACNYLIK PIRLEELRNL WQHVIRRRGR QYDRYVKLKN SHGDSSDIGR VADSPESTAS  180
EGDVVIKDIR GLKEARVNWT PQLHQQFLKG VNESRLYKVV PKKILKTMNV PGLTREKVAS  240
HLQKYRLYLK RLNGIVPEPF PVASFQASGQ GKSGGTMQIR LGGKTISLSP SSSSRSCPGL  300
KAPPLRLELA GRDLDEATLE SLQQFRSHEQ DEKLASAAKR GQILPQLIVA SAPDPTTRNI  360
YNIHVDQGAE SEDHDHDKKK SMNALAVIDE DTFSPTGLHV LVVDGDTLCL AALERMLRQC  420
DYKVTTSTSV SQAISLVMEN KGSFDIVMSE VYLPGEDGFK LLDVVGVGLG LPVIKTNVVM  480
RGITRGACNY LIKPIRLEEL RNLWQHVIRR RGRQYDHYVK LKNSHGDSSD IGRVADSSES  540
TASKGDEVIK DIRDLKEARV NWTPQLHQLF LKAVNESGLD KVVPKKILKT MNVPGLTREN  600
VASHLQKYRL YLKRLNGIVL EPFPVASFQS SGQGNSGGTM QIRQGRKTSS LSPSSSSGSS  660
SGLNAPLLRL ELAGRDLDEA TLESLQQFRS HEQDEKLASA KRGQVLQQLI VDSAPVLTTT  720
NIYNIHVDQG SERFYVGLFR KNLQEGGGND LAAQRNKLDF AEDLQHNTKT PPSIVDLSPH  780
QSQTQNPSTA TEFLENNDEQ SLWMDEVDNI SEEDLLFNDF VEEDMELDNH FINFTSFPTA  840
SESALSEEYD VISNADNNLC QPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-17196613357Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002967848.13e-88two-component response regulator ORR21 isoform X2
SwissprotB8AEH13e-63ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X63e-63ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLA0A0D6R6V81e-109A0A0D6R6V8_ARACU; Two-component response regulator
STRINGEFJ171529e-88(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.16e-54response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]