PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00001979-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 497aa    MW: 56055.4 Da    PI: 9.3008
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00001979-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY23.11.5e-073383643359
                       --EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY  33 pvkkkversaedpkvveitYegeHnhe 59 
                        +k+ v+r+aedp++v++tYegeH+h+
  PSME_00001979-RA 338 ASKRIVQRCAEDPTIVITTYEGEHTHS 364
                       57899*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007740.0088328365IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-6337364IPR003657WRKY domain
PfamPF031061.6E-4338363IPR003657WRKY domain
SuperFamilySSF1182909.81E-5339364IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MPRRIETPTD SKTSDRELEL AGKITRTGST TTVVNPTLEI RKQSPSETIV VQFEKEVVTP  60
IKELTSRLLL DTTKGMHVEG KEITSDNKDT RKKVVSPKEP LLWIKHKIYN TWSKAAADKD  120
QVSSGGLASD KVAKRVKKVS KPWAKEYNAN QQKELKEVEN ALKRIYEMNN SGVFLEDELK  180
EITMLVAEIN RRKEENQELM SMLEQMTRKY SDLQKHIRYL VKHQQGVNGS QAFNIGHRRE  240
DLLCTRPIHV DSSHGVSDQS DNNWDRHERD GKKEKKSAKF MEDHQLPSKK MKINYLQSAQ  300
IENGINSSMD DKPCDHQELQ NKTHQALTKD SSQQTAAASK RIVQRCAEDP TIVITTYEGE  360
HTHSLIRMTT ANAVADSQFT PVSTFIPRIS SSSSFPTITL DLIADNQSNP GLQFRPPNLK  420
AGSFQHSTPQ AVFDQNQHSS IMQEFMTFIK ADTNFIAALA VATAGSLLNL GTPIQGMPKY  480
PPATRYIDRP STQEALV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK92e-78A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.11e-07WRKY DNA-binding protein 18