PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002019-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 191aa    MW: 20792.3 Da    PI: 4.7579
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002019-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26084.12e-266821590
            DUF260 15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
                      dCv+apyf++++ +++fa++hk+FGasnv++ll +lp  +r++a+ ++ yeA+ar++dPvyG v++i++lqqq + +
  PSME_00002019-RA  6 DCVFAPYFCSDEgAAHFAAIHKIFGASNVSNLLLHLPIPDRSEAVVTISYEAQARLQDPVYGGVAHIFALQQQAQLA 82
                      7*********9989**********************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.462192IPR004883Lateral organ boundaries, LOB
PfamPF031956.1E-24683IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDNILDCVFA PYFCSDEGAA HFAAIHKIFG ASNVSNLLLH LPIPDRSEAV VTISYEAQAR  60
LQDPVYGGVA HIFALQQQAQ LASRVSSGLA SISANHPVIS SSSYSQHLQF PAHLSLPCQP  120
IPQPYNALLS RVKEENSCGF TTYMDCDFSV SPSDSSSPLM EVLQRCRSLE ENEGEDNGEL  180
QALAHALLWR G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-187782696LOB family transfactor Ramosa2.1
5ly0_B1e-187782696LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D31e-84D5A9D3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-37lateral organ boundaries-domain 29