PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00002086-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

Dof

Protein Properties

Length: 221aa MW: 24585.5 Da PI: 9.362

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00002086-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	39.3	1.4e-12	102	130	34	62
zf-Dof 34 kaCrryWtkGGalrnvPvGggrrknkkss 62 ++CrryWtkGG lr v vGgg+r+nk+++ PSME_00002086-RA 102 QTCRRYWTKGGNLRTVLVGGGCRNNKRAK 130 79************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-7	102	128	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-8	102	128	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEYPQQSSLL DGMNLGVGDV VNLKIEEQGY QVDEELDAVV DFIAPIQPRR YVHIRWAWLK 60 AKGFYSGKML LEKGERRLSK GSKNNDDAQP FSNLHDSTDW PQTCRRYWTK GGNLRTVLVG 120 GGCRNNKRAK RTVAAEQPVF NTQNEPTTSA RPSANALPIS LDHHQNDLNP ATNSSSYFNL 180 SAHSTAGSTE ASLAFARIQE VARNGGRSKE FIKAAEKGML F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-10	OBF binding protein 4