PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002384-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 1294aa    MW: 145610 Da    PI: 7.1271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002384-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-05573595123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C  C+ +F++k +L+rH ++H
  PSME_00002384-RA 573 YVCRMCKNPFTNKRDLERHVKLH 595
                       9********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.07E-5539595No hitNo description
SMARTSM003550.68539562IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515539567IPR007087Zinc finger, C2H2
PROSITE patternPS000280541562IPR007087Zinc finger, C2H2
SMARTSM003550.0059573595IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.011573600IPR007087Zinc finger, C2H2
PROSITE patternPS000280575596IPR007087Zinc finger, C2H2
SMARTSM003550.52607630IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58607635IPR007087Zinc finger, C2H2
PROSITE patternPS000280609630IPR007087Zinc finger, C2H2
SMARTSM003550.41705728IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.829705733IPR007087Zinc finger, C2H2
PROSITE patternPS000280707728IPR007087Zinc finger, C2H2
SuperFamilySSF821997.98E-769551248No hitNo description
Gene3DG3DSA:2.170.270.101.9E-809551256No hitNo description
SMARTSM004681.0E-69601088IPR007728Pre-SET domain
PfamPF050332.3E-129641096IPR007728Pre-SET domain
PROSITE profilePS508679.15210251101IPR007728Pre-SET domain
SMARTSM003171.6E-4111041241IPR001214SET domain
PROSITE profilePS5028018.09711041235IPR001214SET domain
PfamPF008564.1E-2011151234IPR001214SET domain
PROSITE profilePS508688.51212421258IPR003616Post-SET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0018024Molecular Functionhistone-lysine N-methyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1294 aa     Download sequence    Send to blast
ELVNAVLWDD VAKLWDAPVQ PNLGSDWKTW KQECMKWFSV SNHHLSKSGL EGENEKAAHF  60
EDMDIAKSKV SRKRPKLEIR RGETRSSEIT DVNGSELQAH MEMVDSIISN QQELSTSSQG  120
LSVCSVEGLT NSSIEDVAQV NTRNKVGDDS GYQIVPYSGG NQETPLTEYK SSSKNYLMGS  180
SEHKHQQCSA FIETKGRQCS RWAKDGGMYC CMHLSFDSPD NARRVEQVGS LSQSSICQGM  240
TIYGRRCTHR CKNGSSFCRK HLLQDGQTPD SDRTPSSNTS VNSNKRVRLS VEGQHLVKNQ  300
PSDTPLQDLH DVSERSAQRW SNDGGNIRRH QQFESQSQDF VVQDKSSAKG LHQSVNWSRC  360
IGWCRNNSGQ CSHRAKPGSS YCEKHLPSSA GHGGKISDRH VSSELLNKLL RNTSSEKDRI  420
QLCRATDLLR EFMNVCLLEG TAYRSNSKAR ILDWIIEEVS KDLKAAEALL TIVSCEKEEL  480
GKHLGFEEGK DSGTAIVPWI PEIKVQCPVD TAMDDGRLKT IRENGMLVGN CFANDGQMLK  540
CKLCGEEFSD SQALGHHWIV NHKKEAQCFF RGYVCRMCKN PFTNKRDLER HVKLHHAESL  600
LECCILLSCI HCGSHFINYE QLWEHVVSAH SEEFIRSVGI LEQVDGSKAL VPVKAEDGIQ  660
NDTYVVGTSK QEVTSSSGIS NHVLTHNGST VKEKGIVNRN TVRRYTCRFC GLKFHLLPDL  720
GRHHQAEHMA TSSNKTLISK KGKEILSVKW RSNKVNSKLM QKVGSSVGLK HATIIARKKC  780
VEKTDLHDSR KMNGYSEIPE QSEKNGRTTE FYCSAVAEML LTEVQKTRPW PRNQELLTIA  840
RSACCRFNLH AVLEEKYGPL PERLYIKAAR LCSEANIRVE WHREGFICPK QCKYMEDCKH  900
ATMLTPLPDV HFNSLPAQLE DLKMVAKEIG NGVTWEKDES HLVLTSSDFG SCQGKAFVIC  960
EDLSFGKEAM PVPCVIDEDL MDPSISALYK EGQDRNFDTY MQNFTYITER LLDPSLGLDT  1020
KSSQLGCTCT QPQCFPESCD HVYLFDNDND DAEDIYGQPM HGRFPYDEKG RIILEEGFLV  1080
YECNSMCSCH KECPNRVLQK GVQVKIEVYK TKHKGWAVRA AQVISRGTFI CEYLGEVLND  1140
QEANKRGERY DNEGCSYLYD IDAHIDATDL IDGVQPYVID ATKYGNVARF INHSCLPNLV  1200
NYQVLVESMD CQLAHIGLYA SRDIAVGEEL AYDYRYKLLP GKGCPCNCGA SNCRGRGKAC  1260
NASDGRSAYL SLQDEGESPV HRIRCQRGIR NTRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2o8j_A4e-4895812709280Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
2o8j_B4e-4895812709280Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
2o8j_C4e-4895812709280Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
2o8j_D4e-4895812709280Histone-lysine N-methyltransferase, H3 lysine-9 specific 3
5t0k_A4e-4895812709280Histone-lysine N-methyltransferase EHMT2
5t0k_B4e-4895812709280Histone-lysine N-methyltransferase EHMT2
5t0m_A4e-4895812709280Histone-lysine N-methyltransferase EHMT2
5t0m_B4e-4895812709280Histone-lysine N-methyltransferase EHMT2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1059970.0BT105997.1 Picea glauca clone GQ02901_B17 mRNA sequence.