PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002427-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 206aa    MW: 22856.9 Da    PI: 9.6273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002427-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.54.9e-1389132755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + Er+RR+++N+ +  Lr l+P+      +K++K++i+  A++YI+ Lq
  PSME_00002427-RA  89 ATERKRRRKVNELLMSLRALVPNI-----TKMDKSSIVSDAIDYIQILQ 132
                       68*********************7.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.982131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.66E-1687152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-1488137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1289136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-1189132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-1291136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEGKSVGGSS LEIASYLEVG VAGISSNSID PLHTLLGMES FGHSKRNCSS MLINFGQNEE  60
HYADKVTNIV DKRGQASPSN VSWASRNLAT ERKRRRKVNE LLMSLRALVP NITKMDKSSI  120
VSDAIDYIQI LQKQIKEREV SIPALHSNIA QQRRSNTREL ISSNMTGSVD EGDYEKKPTK  180
SQAQQGFKII EVSLDRIFSG YLLQLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19195RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.29e-17bHLH family protein