PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002485-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 256aa    MW: 28819.7 Da    PI: 9.2352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002485-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.7e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+++++q G+g+W++++++ g+ R++k+c++rw +yl
  PSME_00002485-RA 14 KGPWTPEEDKILLNYIRQNGPGSWRAVPKYAGLCRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding43.57.5e-1467112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T+ E+  ++ ++  lG++ W++Ia+ ++ gRt++++k++w+++l
  PSME_00002485-RA  67 RGPFTQNEERTIIFLHVILGSR-WSSIASQLP-GRTDNEIKNFWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-24664IPR009057Homeodomain-like
PROSITE profilePS5129425.23965IPR017930Myb domain
SuperFamilySSF466893.95E-2911108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002499.2E-171461IPR001005SANT/Myb domain
CDDcd001676.60E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.6E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129417.48166116IPR017930Myb domain
SMARTSM007176.4E-1266114IPR001005SANT/Myb domain
PfamPF002491.9E-1267112IPR001005SANT/Myb domain
CDDcd001671.76E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRASCYEET GLKKGPWTPE EDKILLNYIR QNGPGSWRAV PKYAGLCRCG KSCRLRWTNY  60
LRPDIKRGPF TQNEERTIIF LHVILGSRWS SIASQLPGRT DNEIKNFWNT HLKKRLLKMG  120
LDPSTHAPRS EEAKPSALLM HKVQWENVRL DAEARLSRET QMGMPFSTAS YQINSTVETM  180
MSNFNAPADY FLKVWNSQAG EAFRMEASSQ SESCNNSCDI FDPSGVGAVN QVSSTEITKS  240
KIPITSSPIS SFFIGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-28121165108B-MYB
1h8a_C7e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255443.12e-88PREDICTED: transcription factor MYB3-like
SwissprotQ9M2D99e-87MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A222UAM76e-97A0A222UAM7_GINBI; R2R3MYB15
STRINGXP_010255443.19e-88(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-88myb domain protein 17