PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00002586-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 279aa MW: 31723.9 Da PI: 6.3522

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00002586-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	208	254	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h +Er+RR ++N+ f+ Lr ++P + kK a++L ++ +Y+ +L PSME_00002586-RA 208 NHLVAERKRRGQMNDIFSALRAVVPVkP-----KKAGRATVLLQTKDYVIHL 254 68899*******************55.....89***********9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	7.46E-15	204	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.405	204	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-6	208	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.66E-8	208	256	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-14	208	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-7	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MNRIMENYCN TADNSSLGLL HDFMYSPLSS PKLFLDNANE TSLDTIDRTT IDDYDVCELD 60 FIEPTSNSFE SAAADYPCCC LPSQSSNAFA SLDLLLHSQK GIDNAQPSVS IWEDSTITVS 120 TEGIKSNWPE ELGFSFDQKR NSAFVEWKAT NPNLPDSCKP INDLSLQKRC IRFFNDINNH 180 KIRSPRYKNN CDDWSMTVCN NYDKLAINHL VAERKRRGQM NDIFSALRAV VPVKPKKAGR 240 ATVLLQTKDY VIHLKKCIQQ LEQRNRELEA LLLKKPSVT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-08	bHLH family protein