PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00002749-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

ZF-HD

Protein Properties

Length: 250aa MW: 27733.7 Da PI: 8.6479

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00002749-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	108.6	3.6e-34	53	109	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++vrY+eC+kNhAas+Ggha+DGCgEfmps g+egt +al+CaAC+CHRnFHRreve PSME_00002749-RA 53 KSVRYRECMKNHAASIGGHAIDGCGEFMPS-GDEGTLEALRCAACNCHRNFHRREVEG 109 679************************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-23	52	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.0E-31	55	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.1E-31	56	107	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.385	57	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.5E-19	178	248	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.2E-31	181	249	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.4E-26	187	243	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MELGGQEEEI GMPISVSYGP IHESSKLKIL TPGGNGAAAS DEQQQQQQAA AKKSVRYREC 60 MKNHAASIGG HAIDGCGEFM PSGDEGTLEA LRCAACNCHR NFHRREVEGE PPCYYCYNPR 120 KDSRKRPGGS PLPLALPSTS PSGVIARPSP QMIMAFGSGP THENDQQEHD MGFHGIHGAS 180 MAMPIMKKRF RTKFTQEQKD KMCSFADKLG WRIQKHDEAA VQQFCMELGV KRHVLKVWMH 240 NNKHTLGKKM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-26	188	245	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00258	DAP	Transfer from AT2G02540	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT124341	0.0	BT124341.1 Picea sitchensis clone WS0473_C24 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024393207.1	6e-82	zinc-finger homeodomain protein 2-like
Refseq	XP_024393215.1	6e-82	zinc-finger homeodomain protein 2-like
Refseq	XP_024393224.1	6e-82	zinc-finger homeodomain protein 2-like
Swissprot	A2Z259	1e-64	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	8e-65	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	D5ADH8	1e-173	D5ADH8_PICSI; Uncharacterized protein
STRING	PP1S230_85V6.1	2e-81	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-63	homeobox protein 21

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]