PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00002842-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 633aa    MW: 69760 Da    PI: 9.8127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00002842-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001109131123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C+ C+k F r  nL+ H r H
  PSME_00002842-RA 109 FICEVCSKGFQRDQNLQLHRRGH 131
                       89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.56E-6108131No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5108131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.803109131IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-4173206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.56E-6180205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MSNITSASRE ASVSSGNTIT MADNKNTRQP PQQQLSTPSS ANGAGNINTA QQNPVKKRKR  60
NLPGTPGMLY SHFSIYPIRI VCLFQQIFVY PDAEVIALSP RTLMATNRFI CEVCSKGFQR  120
DQNLQLHRRG HNLPWKLKQR TSSEIRKRVY ICPEPTCVHH EATRALGDLT GIKKHFCRKH  180
GEKKWKCDRC AKRYAVQSDW KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALADDG  240
TRISEGINIL PQVDRSSSPA KSNVASPDGR IRSHLSEGPL RSGLSLQFLG HEDKITQQVT  300
NPNEQIHPAA AFIYGSKTMQ PGPVGMTGHE YESQLKRNPH VFPMPMSTTS TNSGSMYSSI  360
YSSRFHGMNT ANFGGDSSPG NHVNSDGNTG YTTIPPMSAT ALLQKAAQMG ATASNAPLRS  420
ALRMAASGLQ SSWPSRREGL IAASNMKDQF HSFRPMHNDI PTCNSLRSRY NFSESAIQQR  480
SSENPGHLHE STIDPARLQP FTPSGLYMTE NHMQSATIGG QFMDSCTGFG GNGHPRDNMG  540
ESQLQERTPV IDNPWGNLNL DGGDKLTRDF LGVNEVAGGI ARALSVRNIH VNDRSQFHSR  600
NSYSNSSDIK YPTGSPNSHG GKAQSPQKSW DVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34181244366Zinc finger protein JACKDAW
5b3h_F9e-34181244366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785880.0EF678588.1 Picea sitchensis clone WS02928_O04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRQ30.0B8LRQ3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-103C2H2 family protein