PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00002912-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 478aa MW: 53502.8 Da PI: 6.164

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00002912-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	153.2	1.7e-47	150	243	1	94
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rp+qgs+w+qdycs+fh ++alneg+p + pvlrp+gidlkdgllfaal ak+ k+ gipecegaat+kspwna+ PSME_00002912-RA 150 PPPKAFLGPKCALWDCPRPTQGSNWCQDYCSNFHGMVALNEGPPSMGPVLRPGGIDLKDGLLFAALGAKTVVKSFGIPECEGAATKKSPWNAP 242 89******************************************************************************************9 PP VOZ 94 e 94 PSME_00002912-RA 243 V 243 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MGKRSKSMPK STTHQLFKTK AKNRVDDLKG MFIDLQQVRK ESQVNDALVL EEQVHQLPWE 60 CKAELHGESP TTSMLDFYVD HANAEAQNID GTSRSKNIHT ESLLQTTDEG LEAAAQMNQD 120 FDHNLCLSLD PEVEEEHIPK FQGPCPGISP PPKAFLGPKC ALWDCPRPTQ GSNWCQDYCS 180 NFHGMVALNE GPPSMGPVLR PGGIDLKDGL LFAALGAKTV VKSFGIPECE GAATKKSPWN 240 APVMQVMKEI GGMKRSYYMD PQPSNQFEWH LYEYEMNNCD SCALYRLELK QVDSKKNTKA 300 KVVVCHFGWY EFLITPPAGN FDRVGVAYLL IKSPRDGEVP DNRIREPMLA QVDVVIRPQN 360 LTLYSRVLQD HIICEDSRSK VVVEDAYLEP QNSQTLHLRL VKGNATCGIS NDHQQGGPYP 420 NVLAPPEHII PCVEHLKMSA DVFRLLPSNA HNTTRLEGRS CLLRESHNSL QVSKADED

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MGKRSKSMPK STTHQLFKTK AKNRVDDLKG MFIDLQQVRK ESQVNDALVL EEQVHQLPWE  60
CKAELHGESP TTSMLDFYVD HANAEAQNID GTSRSKNIHT ESLLQTTDEG LEAAAQMNQD  120
FDHNLCLSLD PEVEEEHIPK FQGPCPGISP PPKAFLGPKC ALWDCPRPTQ GSNWCQDYCS  180
NFHGMVALNE GPPSMGPVLR PGGIDLKDGL LFAALGAKTV VKSFGIPECE GAATKKSPWN  240
APVMQVMKEI GGMKRSYYMD PQPSNQFEWH LYEYEMNNCD SCALYRLELK QVDSKKNTKA  300
KVVVCHFGWY EFLITPPAGN FDRVGVAYLL IKSPRDGEVP DNRIREPMLA QVDVVIRPQN  360
LTLYSRVLQD HIICEDSRSK VVVEDAYLEP QNSQTLHLRL VKGNATCGIS NDHQQGGPYP  420
NVLAPPEHII PCVEHLKMSA DVFRLLPSNA HNTTRLEGRS CLLRESHNSL QVSKADED

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106963	1e-49	BT106963.1 Picea glauca clone GQ03101_E12 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-105	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	4e-94	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-104	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-104	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-96	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]