PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003641-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 466aa    MW: 50774.3 Da    PI: 4.8709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003641-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19108157255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +kk++g
  PSME_00003641-RA 108 VYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEAKKIRG 157
                       69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.657108165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-31108166IPR001471AP2/ERF domain
PfamPF008471.4E-12108157IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-22108166IPR016177DNA-binding domain
SMARTSM003806.8E-35108171IPR001471AP2/ERF domain
PRINTSPR003671.6E-11109120IPR001471AP2/ERF domain
CDDcd000181.62E-33109167No hitNo description
PRINTSPR003671.6E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MCGGAIISDF IPASRSRRVS ARDLWPDFDT FAEFINGGAV PESFNKSASF DDGVPEFDGE  60
YKQKNKPRKD FAKSKQGFSS GSESETIPPL KDFKVPAAKS TGRKRKNVYR GIRQRPWGKW  120
AAEIRDPRKG VRVWLGTFNT AEEAARAYDA EAKKIRGKKA KLNFADDSFA AKADISMKVS  180
GKKVKSCAKN IDLLLEGLNV NSKVKPSYSA NPDLLEGYNI NREVKLSLKD VCRSDLPIYG  240
HNDMEYGDFE FLKPAASVQG NSNVSAGQSS ENSNLSQTLQ KSCSCEICSH NYSEASNLMP  300
TAYGDAVNFE QVNSSNPAGY FDSDHSSMSV DGAHIPWAHE TKTPEITSVY DDANESTFVD  360
IKPPVVGAIK DGSVDTPIEV DGGTGECYKT KDDIVQLEFS EELSALESYL GLAVGSNLKA  420
TADQSMDDAG QVEGSFSDEQ RSLEQWIYGD LSISGLAFPS SLGSPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20109164359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-31related to AP2 12