PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003700-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 214aa    MW: 23752.2 Da    PI: 6.5913
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003700-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260113.31.6e-35491491101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +C aCk+ ++kC+++Cvlapyfp ++p+kf  +h++FG  + +kll+++p e+r +a+ss+vyeA  r+rdPv+G++gvi +l+++++ l+ +
  PSME_00003700-RA  49 SCGACKISKKKCSENCVLAPYFPLDDPQKFLSIHRVFGKGHAIKLLRDIPAEQRGEAVSSMVYEASQRLRDPVHGCLGVIDDLHKKVAGLQLQ 141
                       6******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l++++++l
  PSME_00003700-RA 142 LDSTQAQL 149
                       *9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.66948149IPR004883Lateral organ boundaries, LOB
PfamPF031953.1E-3449146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTGCRWSLSD LFSMIVKDGL THLSFSFVAT YHMMRNTAVQ QGETPSTVSC GACKISKKKC  60
SENCVLAPYF PLDDPQKFLS IHRVFGKGHA IKLLRDIPAE QRGEAVSSMV YEASQRLRDP  120
VHGCLGVIDD LHKKVAGLQL QLDSTQAQLA NISLQHANLL TLVTNSREAL VTNSHEALVP  180
QFYDASLQYS ENAPSNIPHV FDDIVDPLQL WEIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-325014912111LOB family transfactor Ramosa2.1
5ly0_B5e-325014912111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LQR09e-41LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI94e-64B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-43LOB domain-containing protein 1