PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00003774-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C3H

Protein Properties

Length: 774aa MW: 87164.1 Da PI: 6.6236

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00003774-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.3e-07	89	110	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C +f++ G+C Gd+C F+H PSME_00003774-RA 89 RVPCYYFFQ-GYCAKGDQCLFMH 110 79*****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.469	10	39	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	3.8E-13	11	65	No hit	No description
SMART	SM00356	0.002	11	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.465	41	67	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6	43	66	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.68	86	113	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.35E-6	86	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.022	87	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-4	89	110	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
RSAAMDEEAQ KRNTDCVYFL ASPLTCKKGN ECEYRHSESA RINPRHCWYW LSGNCLNPHC 60 AFRHPPLEGH PSTSGTEPLP ASGSSNKSRV PCYYFFQGYC AKGDQCLFMH FPPFGGNQAV 120 PTSQKTTKVT GTGAEPQSVE KKASNGADNG TVKPTSIQST SSEVQLLTEA KHVAEAGPLP 180 SHAKSAQHAP ERSLPEVDFS PLNMLDAPAN ELNFVTRSPV HEVQPTDDWL DNDMESEEWL 240 EESSPGFDVL VDDGPDQLGY QEEAEYLSNF DMEQGQELTH GRESLIPMTD EMLQFDYESM 300 HDDLGYTEGG SQYAHRSYDP YEEHRHSSYD HVNWHKRKTF DGRVSEGKVM SERRGLSLER 360 YSRQSEKPDL RHRLGKIRRV DRVQIDDKSK RRLQSDSRSG DFQHGHRQRG NEQRYHHDAI 420 TRRQHVTRHN KMRVHSRMPS GSGGLPRGSF HEVELNCEGT TEKVHWRSLS GRHDSSEHIR 480 SRHKEKERGR IYADVAAPSE SSVFRKPSTR NETGKNATDF AKPKTLEQIK EEKRKIALLG 540 NGPRVCDNSE ESKTSPLSGQ HGSQAAVPKS RIQPPSLCGE ERKISFSKVI VHESSKLPTF 600 EGPKPLSAIL KAKQKPTNDD IVEGTHAQGA GELRKQSELI RNPRIPETDE KTLVLSSSAE 660 KEFEKRRFSQ GAKHMYESAT LTSINPSSHV STDFHQGNSL LQNNGKPVMR QNNGDLTMNG 720 AISSHVDKDD TCLEPLKIEN GRTTGEYKSE PDEDEEYLED EEDDFAKKLG GFFS

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

RSAAMDEEAQ KRNTDCVYFL ASPLTCKKGN ECEYRHSESA RINPRHCWYW LSGNCLNPHC  60
AFRHPPLEGH PSTSGTEPLP ASGSSNKSRV PCYYFFQGYC AKGDQCLFMH FPPFGGNQAV  120
PTSQKTTKVT GTGAEPQSVE KKASNGADNG TVKPTSIQST SSEVQLLTEA KHVAEAGPLP  180
SHAKSAQHAP ERSLPEVDFS PLNMLDAPAN ELNFVTRSPV HEVQPTDDWL DNDMESEEWL  240
EESSPGFDVL VDDGPDQLGY QEEAEYLSNF DMEQGQELTH GRESLIPMTD EMLQFDYESM  300
HDDLGYTEGG SQYAHRSYDP YEEHRHSSYD HVNWHKRKTF DGRVSEGKVM SERRGLSLER  360
YSRQSEKPDL RHRLGKIRRV DRVQIDDKSK RRLQSDSRSG DFQHGHRQRG NEQRYHHDAI  420
TRRQHVTRHN KMRVHSRMPS GSGGLPRGSF HEVELNCEGT TEKVHWRSLS GRHDSSEHIR  480
SRHKEKERGR IYADVAAPSE SSVFRKPSTR NETGKNATDF AKPKTLEQIK EEKRKIALLG  540
NGPRVCDNSE ESKTSPLSGQ HGSQAAVPKS RIQPPSLCGE ERKISFSKVI VHESSKLPTF  600
EGPKPLSAIL KAKQKPTNDD IVEGTHAQGA GELRKQSELI RNPRIPETDE KTLVLSSSAE  660
KEFEKRRFSQ GAKHMYESAT LTSINPSSHV STDFHQGNSL LQNNGKPVMR QNNGDLTMNG  720
AISSHVDKDD TCLEPLKIEN GRTTGEYKSE PDEDEEYLED EEDDFAKKLG GFFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT105181	1e-143	BT105181.1 Picea glauca clone GQ02819_H10 mRNA sequence.