PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003891-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 739aa    MW: 80756.6 Da    PI: 8.0975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003891-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.81.2e-10225250227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C +++ t tCk+G+ CkF H++
  PSME_00003891-RA 225 GEKDCTHYMMTRTCKFGADCKFDHPF 250
                       7889********************95 PP
2zf-CCCH41.62.1e-13277303127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++++tG+Ck+G++CkF+H++
  PSME_00003891-RA 277 PGEPECPYYMKTGICKFGSKCKFHHPK 303
                       5799*********************96 PP
3zf-CCCH34.63.3e-11335360227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++  C ff +tG+CkyG++C+F H++
  PSME_00003891-RA 335 GEQVCAFFVKTGICKYGAKCRFDHPK 360
                       6779********************96 PP
4zf-CCCH32.21.8e-10421445226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+ +tG Ck+G++C+++H+
  PSME_00003891-RA 421 GETDCPFYVKTGSCKFGSNCRYNHS 445
                       6789********************8 PP
5zf-CCCH36.11.1e-11487512126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +++++C f+ +tG+Ck+G++CkF+H+
  PSME_00003891-RA 487 PGEPECTFYIKTGECKFGPSCKFHHP 512
                       5799*********************9 PP
6zf-CCCH39.49.8e-13533557327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       + +C+f+++tG+CkyG +CkF H+p
  PSME_00003891-RA 533 ETICPFYLKTGICKYGVNCKFDHPP 557
                       679********************96 PP
7zf-CCCH37.44.4e-12582607227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +++ C+f+++tGtCky ++CkF H+p
  PSME_00003891-RA 582 GEAVCPFYMKTGTCKYAATCKFDHPP 607
                       5789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0064223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.803223251IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-7225250IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929276304IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-11278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6281306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5282303IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-7333360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962333361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6334362IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-9335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5337359IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-6419446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375419447IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8421445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5422446IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4425446IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6486513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328486514IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8488512IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6490514IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4492511IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.723530558IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-8530557IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10532557IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6533557IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5535555IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7580607IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756580608IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-9582607IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-5584607IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.0E-5585605IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MGHQLYSSSQ SMGSASRGNP VLGYNGSRAL EPPMFPARPY DPPGESRYFP GDQLSNSMQH  60
EKPGGRYMFG DRAPSERNPA ETGSRLGSLG MDRYMPSEAT QRVDSSRYYP SQNSSLFLNG  120
SDTALYKSGD AAGFGSSSAY FSSRHSTGLV SPPLQQTQWP GAEPRGSMSG GVTGVKRPNE  180
EVSQNLLGTH NTFGQNEAHS SVNALAKRPR MDGSSDLPIY PQRPGEKDCT HYMMTRTCKF  240
GADCKFDHPF WVPAGGIPNW KEVPSAAINS ETPPERPGEP ECPYYMKTGI CKFGSKCKFH  300
HPKDRLATLK SDENVDGSEV NPATSDVVLL PERPGEQVCA FFVKTGICKY GAKCRFDHPK  360
DKAGSLKISE HKVDGDSAIT VGIEEQGISG VANGKTEKKV ATLNIKPATM HNSKGLPIRP  420
GETDCPFYVK TGSCKFGSNC RYNHSDRILV NAPSAVMPFA VQDQPLVGYS GMLPQHSLGA  480
PMPPQRPGEP ECTFYIKTGE CKFGPSCKFH HPLNRPDPSV KLTLAGLPRR EGETICPFYL  540
KTGICKYGVN CKFDHPPPGE LDTARAQPPV KLTLAGFPRR EGEAVCPFYM KTGTCKYAAT  600
CKFDHPPPGE AVAKAVAMAA TTEDIPEDNN KMDSGIAAVK ATDENPQHTR KKVDLFKGCK  660
VCCQTASGVC KEVFQIQGGK ECLEVDCNFL ASCAVRDYFK DTTRELFMHY LFGTITLPTF  720
RFPMILVFNN MLFAIIIEH
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1150640.0BT115064.1 Picea glauca clone GQ03608_F12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260864.11e-157PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-130C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0D6QVA80.0A0A0D6QVA8_ARACU; Uncharacterized protein
STRINGXP_010260864.11e-157(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-131floral homeotic protein (HUA1)