PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00003925-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 131aa    MW: 14840.2 Da    PI: 5.7465
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00003925-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.35e-2820113598
            DUF260   5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                       Ck+ +++C ++C++   f +++ +kf +++++FGa nv+kl+++lp ++r +a++sl+yeA ar+++P  G+vg+i +lq+q++ l++++ ++
  PSME_00003925-RA  20 CKIEKKECMDNCTILYRFLSKDLQKFSILNQVFGACNVIKLIQDLPSNQRVEAIDSLIYEASARIEEPALGCVGIIEQLQRQISDLESQITSI 112
                       ***************************************************************************************999876 PP

            DUF260  98 k 98 
                       +
  PSME_00003925-RA 113 E 113
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.85315116IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-2720112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSNSNEKPRI PSLSTAFHDC KIEKKECMDN CTILYRFLSK DLQKFSILNQ VFGACNVIKL  60
IQDLPSNQRV EAIDSLIYEA SARIEEPALG CVGIIEQLQR QISDLESQIT SIEARVQKIH  120
CQQAQLLAFL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-2681233118LOB family transfactor Ramosa2.1
5ly0_B9e-2681233118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U31e-47A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.13e-31LOB domain-containing protein 11