PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004023-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 405aa    MW: 45102.2 Da    PI: 5.3337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004023-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13290333755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++Er+RR+++N+ +  Lr l+P       +K +K++i++ A++YI+sLq
  PSME_00004023-RA 290 AVERKRRRKVNELLMSLRALVPYI-----TKKEKSSIVRDAIDYIQSLQ 333
                       79*********************7.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.538283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-15288351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11290333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12290350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.28E-13290337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGGYMGMLHR VSKPQNNDAQ PCSNLHDSID WPQGKSMGGS SLETTSYLEM GVAGISSNNI  60
DPLHTLLGME SFGLDDFEDS VFTPSSEILG FSGLESPGST TINMDSILES EDRWSLKYLQ  120
CISQSPYRWT NLREGNLQPL SSNENYGSTA DHTYMSNKNV QNDEPASAPC NIVVKDIGRG  180
SKRNCSSMLI TFGQNEEQYA DKPLSSNENY GSTADHTYMS NKNVQNDEPA SAPCNIVVKD  240
IGRCSKRNCS SMLITFGQNE EQYADKVTNI VDKRGQESPS NVSWASRNLA VERKRRRKVN  300
ELLMSLRALV PYITKKEKSS IVRDAIDYIQ SLQKQIKERE VSIPALRSNT AQQSRSNTSE  360
LISSNMIGSV DEGNYEKKPT KSQAQQAFKI IEVSLDRLFL DISYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292296RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.33e-13bHLH family protein