PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004067-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33995.6 Da    PI: 5.9714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004067-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1995148356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ +q++ Le+ Fe+++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  PSME_00004067-RA  95 KKRRLSVQQVRSLETSFENESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWK 148
                       56789************************************************9 PP
2HD-ZIP_I/II128.23.4e-4195185292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kkrrls +qv++LE+sFe+e+kLeperK++la eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++y+++++e+++Le +v++L++e+ 
  PSME_00004067-RA  95 KKRRLSVQQVRSLETSFENESKLEPERKMQLAAELGLQPRQVAVWFQNRRARWKTKQLERDYDDLKQQYEEVVAEKRKLEGQVARLTQEVV 185
                       9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1984152IPR009057Homeodomain-like
PROSITE profilePS5007116.90890150IPR001356Homeobox domain
SMARTSM003896.9E-1793154IPR001356Homeobox domain
CDDcd000868.18E-1695151No hitNo description
PfamPF000468.6E-1795148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.2E-2097157IPR009057Homeodomain-like
PRINTSPR000313.9E-6121130IPR000047Helix-turn-helix motif
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PRINTSPR000313.9E-6130146IPR000047Helix-turn-helix motif
PfamPF021834.0E-7150182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MVQEGYKFHG GLRSRGFALI HTISMSFNFG TGNEHPVNGF LHLQSGLFSR RFHANGHGLR  60
SGSHFYGSVL YDNPSSSEEV GLCDDEETSG GLHSKKRRLS VQQVRSLETS FENESKLEPE  120
RKMQLAAELG LQPRQVAVWF QNRRARWKTK QLERDYDDLK QQYEEVVAEK RKLEGQVARL  180
TQEVVAAKGE KKDQNTFITA KCEEENGLQK TTTSTTEEMQ STSPSFCSDA DSNRKLLLSS  240
PSCNVQAAAY KTDEENDKEN LQVLYSSDFH DQLDMYRYLM AAEEQPHHGP DWLNFENL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864680.0EF086468.1 Picea sitchensis clone WS02746_E10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYL70.0A9NYL7_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.19e-36homeobox 3