PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004379-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 295aa MW: 33872.6 Da PI: 6.5962

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004379-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	132.6	2.8e-41	20	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrF Pt+eel+ +yLkk v+ + l+++++i+++d+y+++Pw+Lp +++ +e++w+fF++r + + +g+r+nr t sg+Wkatg+d+ v PSME_00004379-RA 20 LPGFRFYPTEEELLGFYLKKMVQCVHaLKFDKIIPTLDLYRYDPWELPgLAHDVGERQWFFFVPRVHGK-SGSRPNRLTVSGFWKATGSDRVV 111 69*******************9886888888***********657777999***99875.69***************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + + +glkktLvfykg+a g++tdW+m+ey+l PSME_00004379-RA 112 RNDQLQCIGLKKTLVFYKGKALGGQRTDWIMNEYKL 147 99999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-44	16	169	IPR003441	NAC domain
PROSITE profile	PS51005	48.89	19	169	IPR003441	NAC domain
Pfam	PF02365	4.0E-22	21	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAMMEEIHND GDVQRELMVL PGFRFYPTEE ELLGFYLKKM VQCVHALKFD KIIPTLDLYR 60 YDPWELPGLA HDVGERQWFF FVPRVHGKSG SRPNRLTVSG FWKATGSDRV VRNDQLQCIG 120 LKKTLVFYKG KALGGQRTDW IMNEYKLPDL SSSTTKNMVD MVLCRIYRKA VSRKSIEQRA 180 KPNHVQIEDP VLSAGNSFGL NGSFQFSYPI RETGISSLHH QNQNQEGVCS FDLSKTNDQD 240 SLFEYLDETM FCEETMVLKT TQPCKPQHLE LPTSSIDCFF NHDAVPSPWA DNINA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-41	12	172	10	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-41	12	172	10	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-41	12	172	10	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-41	12	172	10	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-41	12	172	13	171	NAC domain-containing protein 19
3swm_B	1e-41	12	172	13	171	NAC domain-containing protein 19
3swm_C	1e-41	12	172	13	171	NAC domain-containing protein 19
3swm_D	1e-41	12	172	13	171	NAC domain-containing protein 19
3swp_A	1e-41	12	172	13	171	NAC domain-containing protein 19
3swp_B	1e-41	12	172	13	171	NAC domain-containing protein 19
3swp_C	1e-41	12	172	13	171	NAC domain-containing protein 19
3swp_D	1e-41	12	172	13	171	NAC domain-containing protein 19
4dul_A	1e-41	12	172	10	168	NAC domain-containing protein 19
4dul_B	1e-41	12	172	10	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010935230.2	1e-62	NAC domain-containing protein 22
Swissprot	Q10S65	2e-57	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-112	A0A075M5N5_9SPER; NAC domain protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	8e-57	NAC domain containing protein 36

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]