PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004484-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 274aa    MW: 30729.6 Da    PI: 9.8951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004484-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12145187855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + r+RR+++N+ +  Lr l+P+      +K++K++i+  A++YI+sLq
  PSME_00004484-RA 145 AKRKRRRKVNELLMSLRALVPNI-----TKMDKSSIVSNAIDYIQSLQ 187
                       679*******************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-15143206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-14143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-10145187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-12145205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.89E-11147191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MPSSESLGFS GVESLGSTTI NMDSILESKD RWSLKSLQCI SQSPYRWTNL REGNLQRLSS  60
NENYGPTADH TYMPNKNVQN VEPASAPCNI VVKDIGRRSK INCSSMLITF GQNEEHYADK  120
VTNIVDKRGQ ASPSNVSWAS RNLAAKRKRR RKVNELLMSL RALVPNITKM DKSSIVSNAI  180
DYIQSLQKQI KEREVSIPAL RSNTAQQSRS NTSKLISSNT TGSVDEGDYE KKPTKSQAQQ  240
GFKIIEVEQW ESMQEMQIKK DILDAASKYG FQQA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145150KRKRRR
2145151KRKRRRK
3146150RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-11bHLH family protein