PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004522-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 182aa    MW: 20336.2 Da    PI: 6.2202
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004522-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601101.7e-34191191101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +C aCk+ r+kC+++Cvlapyf  ++p+kf  +h++FG  + +kll+++p e+r da+ss+vyeA  r+rdPv+G++gvi +l+++++ l+ +
  PSME_00004522-RA  19 SCGACKMSRKKCSENCVLAPYFTLDDPQKFLSIHRVFGKGHAIKLLRDIPAEQRGDAVSSMVYEASQRLRDPVHGSLGVIDDLHKKVAGLQLQ 111
                       6******************************************************************************************** PP

            DUF260  94 lallkeel 101
                       l++++++l
  PSME_00004522-RA 112 LDSTQAQL 119
                       *9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.78118119IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-3319116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNYEIVLQMR NTETPSTVSC GACKMSRKKC SENCVLAPYF TLDDPQKFLS IHRVFGKGHA  60
IKLLRDIPAE QRGDAVSSMV YEASQRLRDP VHGSLGVIDD LHKKVAGLQL QLDSTQAQLA  120
NISLQHANLL TLVTNSHEAL MVTDSHEALV PHFYDASLQN TPTNIPHVFD DIVDPFQLWE  180
IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-31161198111LOB family transfactor Ramosa2.1
5ly0_B2e-31161198111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027181149.12e-42LOB domain-containing protein 1-like
SwissprotQ9LQR03e-39LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI92e-62B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-41LOB domain-containing protein 1