PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004584-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

C2H2

Protein Properties

Length: 285aa MW: 32052.4 Da PI: 10.3893

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004584-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H PSME_00004584-RA 125 FSCNYCERKFYSSQALGGHQNAH 147 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.62E-6	123	152	No hit	No description
PROSITE profile	PS50157	11.157	125	152	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	127	147	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MKPVVSMLSQ AVSSEMAAGN VSVSSQASSI QKSEISLDLS LYSCNQLPSG FSSVLRDDDK 60 IQTADSYAHH SNPAGKPEHR SSPMPSQDSI SKPPERISGL NRNNEEFRTE SNCVPSEDHP 120 LSRLFSCNYC ERKFYSSQAL GGHQNAHKLE RSKVTRKAQR MTWPQSYPLS SSNSQTNSIS 180 AGTSFTVKKD SRKVDVDLVN VLCIENKLLN LVHSKDIGRK SFKPFHDGKK KLKARTNETN 240 SLRRCGGQNH IDLKRRKEIK KIEKFKLKNT IFLLVKDHCL LFKKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24625.1	5e-15	zinc finger protein 7