PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004738-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 547aa    MW: 60025.7 Da    PI: 8.7959
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004738-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.41.2e-32210265359
                       -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+geH h 
  PSME_00004738-RA 210 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-DGQITEIVYKGEHSHL 265
                       9***************************************.**************95 PP
2WRKY1061.9e-33407464259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+vkg+++prsYY+Cts +C v+k+ver+++dpk+v++tYeg+Hnh+
  PSME_00004738-RA 407 EDGFRWRKYGQKVVKGNPYPRSYYKCTSLKCAVRKHVERASDDPKAVITTYEGKHNHD 464
                       8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.3E-29206267IPR003657WRKY domain
SuperFamilySSF1182902.09E-25207267IPR003657WRKY domain
SMARTSM007742.9E-36208266IPR003657WRKY domain
PfamPF031066.1E-26210264IPR003657WRKY domain
PROSITE profilePS5081123.342210267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-34393466IPR003657WRKY domain
SuperFamilySSF1182902.35E-28399466IPR003657WRKY domain
PROSITE profilePS5081135.565401466IPR003657WRKY domain
SMARTSM007742.1E-39406465IPR003657WRKY domain
PfamPF031061.1E-25407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEGKERDNKM VLSKPTPSRP TTVRISCPTT TLASFPPVPP AVTDQYDRDP DCRSFSELLA  60
GAMASSPPPA ESPARAGGAS GGVALRPKTV RLKPLSTLSP PPPTSPPLSA SQKMPVQTED  120
SCVPATEAPA EPQASYSHGD PKERTTVVFK PLAKLGTMNP ALSSLANLQK ASLKSENKQT  180
IESPNPVPQN TEQIQRSLPP IPIADRPSFD GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP  240
VKKKVERSHD GQITEIVYKG EHSHLKPQPT RRLPTGTTQQ PNGLEVTGRE MESPRGEKNE  300
YFDVNADQSS PGFYTDTSGR AERLGLTNVS DPSTPARGVS YGNGSPELSP CRSDDGEGVN  360
RADDEDDDEP VSKRRKKDKK IKDLLAPERS NREPRVVVQT SDAEILEDGF RWRKYGQKVV  420
KGNPYPRSYY KCTSLKCAVR KHVERASDDP KAVITTYEGK HNHDPPVARN SNQDAVGISS  480
QVLSGNGANN VAQDKQIQNR PTSFARVSQS AAEEEDRMHV GEVGGVQLMR NNRQSHGEDI  540
DRDGSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-33210466877Probable WRKY transcription factor 4
2lex_A3e-33210466877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373378RRKKDK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6762460.0EF676246.1 Picea sitchensis clone WS02723_M14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ93WV02e-81WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLB8LKI10.0B8LKI1_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.12e-79WRKY family protein