PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004812-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 472aa    MW: 52347.4 Da    PI: 4.677
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004812-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20175225155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGVr+++ +g+W+AeIrdps+     r +lg++ taeeAa+a+++a+ k++g
  PSME_00004812-RA 175 SKYKGVRQRR-WGKWAAEIRDPSK---GVRLWLGTYNTAEEAAQAYDKAAMKING 225
                       89*****998.**********965...4***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.9E-22175233IPR016177DNA-binding domain
PfamPF008477.7E-14175225IPR001471AP2/ERF domain
CDDcd000181.93E-33175232No hitNo description
Gene3DG3DSA:3.30.730.103.1E-30176233IPR001471AP2/ERF domain
SMARTSM003803.6E-36176239IPR001471AP2/ERF domain
PROSITE profilePS5103223.551176233IPR001471AP2/ERF domain
PRINTSPR003671.1E-9177188IPR001471AP2/ERF domain
PRINTSPR003671.1E-9199215IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MPGPQIFPQS LCTTALKTSK KVRGQNKLNT QYVIENERVE RSLATVTRTV RVICTDPDAT  60
DSSSDEDEEA VRFEPKRVVR EIHIPADCSP SVSDSEDEFQ LPICSSLSSL CRIEEECKDV  120
CQEFYAPPEK KLRKNTKGKK VSRKQRTVLK AFERVKSGRV SKCSSSLRSF ADKTSKYKGV  180
RQRRWGKWAA EIRDPSKGVR LWLGTYNTAE EAAQAYDKAA MKINGPSATT NFSGSCTSYT  240
SHRNPPRAAK KQIYDRQWIA AHSVMTRSSA NAKMKPITVE SHMTSSSASL SCISEEGSEE  300
GSDEDWIPVS SLASAPTVST SYSLIDDVGS EDASCSLMME HSTSCSISSD LLADCLEDNA  360
YHGSKNECLA NLDNCNFLLD GTLDLIEHLS IENEDNPLVD FLIPPIHEQN VLESTYPDSY  420
FLDEFGQVFD IGDAGPKDIV SLPDDLDLMD EQNAIVSLNF DLDAEAMSWM NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19173232262ATERF1
3gcc_A2e-19173232262ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187380.0BT118738.1 Picea glauca clone GQ04009_L20 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RXU01e-150A0A0C9RXU0_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5206_2819 transcribed RNA sequence
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-18cytokinin response factor 2