PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004888-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 184aa    MW: 20258.6 Da    PI: 5.7378
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004888-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-171968255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p++   + r++lg+++t+++Aa+a++ a+ +l+g
  PSME_00004888-RA 19 QFKGIRKRK-WGKWVSEIRMPNS---SGRIWLGSYDTPKKAARAYDFAAYCLRG 68
                      58****999.**********933...49************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-301982IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-291978IPR001471AP2/ERF domain
CDDcd000188.14E-291978No hitNo description
PROSITE profilePS5103221.7331976IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-201978IPR016177DNA-binding domain
PRINTSPR003675.9E-122031IPR001471AP2/ERF domain
PfamPF008473.2E-102068IPR001471AP2/ERF domain
PRINTSPR003675.9E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTKPSHSSPE RRSLNSRGQF KGIRKRKWGK WVSEIRMPNS SGRIWLGSYD TPKKAARAYD  60
FAAYCLRGSK AKLNFPDSPP QISCASSLSA PQIQAEAAKF AAEEFGLLSE NGTASSSFGL  120
EAKYTGCIDG HDRIPASHGP TFQDSTSLEL LDSGESLNVE DIPLLDVSME DFGILFQLTE  180
DFWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1618761372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S7L51e-36ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLB8LPP63e-64B8LPP6_PICSI; Uncharacterized protein
STRINGPOPTR_0018s08320.19e-41(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]