PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004891-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 137aa    MW: 15517.7 Da    PI: 10.3078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004891-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-182473255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr+p+    +  r++lg+++t+e+Aa+a++ a+ +l+ 
  PSME_00004891-RA 24 QFKGIRMRK-WGKWVSEIRVPN----SsDRVWLGSYDTPEKAARAYDFAAHCLRE 73
                      69*****99.**********93....25***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381237.9E-191132IPR017392AP2/ERF transcription factor ERF/PTI6
Gene3DG3DSA:3.30.730.106.5E-292482IPR001471AP2/ERF domain
CDDcd000182.77E-272482No hitNo description
PROSITE profilePS5103221.0082481IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-202482IPR016177DNA-binding domain
SMARTSM003801.7E-302487IPR001471AP2/ERF domain
PRINTSPR003676.5E-92536IPR001471AP2/ERF domain
PfamPF008472.8E-112573IPR001471AP2/ERF domain
PRINTSPR003676.5E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MTKPSHNQSR LSSPESRSLN SREQFKGIRM RKWGKWVSEI RVPNSSDRVW LGSYDTPEKA  60
ARAYDFAAHC LRESKAKLNF PHFPPQIPCS SSLSPPQIQA TAAKFAAKEL RLLSENGAAS  120
SSSGYIYICY KIYIYNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1524821473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280370.19e-37PREDICTED: ethylene-responsive transcription factor ERF017
SwissprotQ9S7L57e-35ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLB8LPP65e-52B8LPP6_PICSI; Uncharacterized protein
STRINGVIT_04s0008g02230.t013e-36(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.16e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]