PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004892-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 184aa    MW: 20225.4 Da    PI: 4.8746
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004892-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-171968255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG+r +k +g+Wv+eIr p++   + r++lg+++t+e+Aa+a++ a+ +l+g
  PSME_00004892-RA 19 QFKGIRKRK-WGKWVSEIRMPNS---SGRIWLGSYDTPEKAARAYDFAAYCLRG 68
                      58****999.**********933...49************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-301978IPR001471AP2/ERF domain
PROSITE profilePS5103222.2211976IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-201978IPR016177DNA-binding domain
CDDcd000182.34E-291978No hitNo description
SMARTSM003805.9E-321982IPR001471AP2/ERF domain
PfamPF008477.0E-112068IPR001471AP2/ERF domain
PRINTSPR003675.9E-122031IPR001471AP2/ERF domain
PRINTSPR003675.9E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTKPSHSSPE SRSLNSRGQF KGIRKRKWGK WVSEIRMPNS SGRIWLGSYD TPEKAARAYD  60
FAAYCLRGSK AKLNFPDSPP QISCASSLSA PQIQAEAAKF AAQEFGLLSE NGTASSSFGL  120
EAEYTGRIDG HDRIPASHGP TFQDSTSLEL LDSGESLNVE DIPLLDVSIE DFGILFQLTE  180
DFWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1718761372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1163252e-74FJ116325.1 Pinus taeda isolate 4484 anonymous locus UMN_5771_02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ84QC22e-37ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLB8LPP61e-63B8LPP6_PICSI; Uncharacterized protein
STRINGPOPTR_0018s08320.16e-40(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]