PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004941-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 380aa    MW: 41881.9 Da    PI: 6.4236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004941-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.62e-15235285255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G ++++ +g++ AeIrd    g + +r++lg+f taeeAa a+++a++  +g
  PSME_00004941-RA 235 RYRGLCRRP-WGKFTAEIRDL---GrRGARVWLGTFKTAEEAAMAYDKAALLNRG 285
                       8********.**********4...4334*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.10E-27234294No hitNo description
PfamPF008472.8E-10235281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-27235294IPR001471AP2/ERF domain
SMARTSM003801.8E-29235299IPR001471AP2/ERF domain
PROSITE profilePS5103221.193235293IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-20235294IPR016177DNA-binding domain
PRINTSPR003675.3E-9236247IPR001471AP2/ERF domain
PRINTSPR003675.3E-9259275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDIHPMSSAH EGCVKDIPFH PRSVGNTTRT SLVLHFSESG LHQGTMDGHP MSSSDEGCGM  60
PQGHSLPSSF NREHQKDTPC AWGLSQGALH SANPLGAEWE GSYQHEHGPV VSAERLLEDV  120
WAHFIAARKS DQPIHDGLQP ANHTKEESCC NVEDQDQDQV QYPLLLPLKE NDSEDMILFQ  180
LLNEPAANLG WTAIHNQQEM AIPGVTGSTA YTPAICSTKM TGAQGEAAEK PSTKRYRGLC  240
RRPWGKFTAE IRDLGRRGAR VWLGTFKTAE EAAMAYDKAA LLNRGTRASL NFPIEKQKQK  300
HIKVSHHHIE LRKKMDAPDA GSTIGVDFSK DDGMSSMSQK IRSSDDIHKV DFVLESPPPE  360
KRFICSAASG LVNETEIIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-24234294161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-22ethylene responsive element binding factor 1