PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004970-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 223aa    MW: 24919.1 Da    PI: 7.8341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004970-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.41.7e-152374255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                      +r+hn++Er+RR+++N  +++L +l+P    + ++K s ++ +++Av+Y+++Lq
  PSME_00004970-RA 23 KRKHNMIERQRRKDMNALLSNLGSLIPAE--TLQGKRSVSDQVQEAVNYVQHLQ 74
                      678*************************6..5*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9482173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-142278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-152389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-122374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.92E-132378No hitNo description
SMARTSM003532.6E-82779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATFCNPNNP NDGQSQGVVP AEKRKHNMIE RQRRKDMNAL LSNLGSLIPA ETLQGKRSVS  60
DQVQEAVNYV QHLQQKVEDI SIERDKMKHN SGNNANVSFQ GMRLSCNDKF CIKAPPVRGS  120
DCELPTVKVK YMGSTFQVWT NTFEDEIVYS DLLGALEDSG LEVLCASSSA INNRIYHTIH  180
TKVISYTCQS QQSSSLSSVP EYKAIFPHLL YQNIRVSSYI AGV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12233KRKHNMIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH56e-54B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.13e-21bHLH family protein