PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004971-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 256aa    MW: 28931.8 Da    PI: 9.1976
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004971-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11123180555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC..........TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkas.......kapskKlsKaeiLekAveYIksLq 55 
                       ++++Er+RR+++N  ++ Lr+llP            +s+K   ++ +++Av+Y+++Lq
  PSME_00004971-RA 123 NKMMERQRRKDMNALLSILRSLLPGENlrcsnlmEVRSRKRAASDLVQEAVNYVQHLQ 180
                       589**********************666******99*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877118179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.24E-9122184No hitNo description
PfamPF000102.7E-8123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11123196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7124185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-10124199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MPKRSSNVYQ DSIGDTVQTI AYQTEYESWC RRSRTHSAVC KLLAGSLKFH KSPRVFAVPI  60
HFYQYDPLKS PEFTIQPIEV PRVYNTHHAS VCNSGLSNPV LTATFSNSSR PNAGQSQGAV  120
PRNKMMERQR RKDMNALLSI LRSLLPGENL RCSNLMEVRS RKRAASDLVQ EAVNYVQHLQ  180
QKVEDLSIER DKMKAKSDNN ANVSFQAVRL SCNDRFCIEA PPIGGADWEF PTLKIESTGS  240
AFQVSDLNIF NLDTLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121130RNKMMERQRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.16e-13bHLH family protein