PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00004973-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 219aa MW: 24650 Da PI: 9.6205

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00004973-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.4e-13	23	74	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +r+h+++Er+RR+++N ++ Lr+l+ + ++K s ++ ++Av+Y+++Lq PSME_00004973-RA 23 KRKHKMIERKRRKDMNALLSILRSLITAeN---LQGKRSVSDQMQEAVNYVQHLQ 74 678***********************66...9******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.8E-12	21	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.122	21	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-14	23	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.49E-10	23	78	No hit	No description
Pfam	PF00010	2.2E-10	23	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-6	27	79	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MATFCNSNSR NDVQSQGVVP AEKRKHKMIE RKRRKDMNAL LSILRSLITA ENLQGKRSVS 60 DQMQEAVNYV QHLQRKVEDL SIERNKMKPN SVNNANDSFQ GLRLSCNDKF CIKAPPVRGS 120 DCEFAAVKVK SMGSTFQDWT NTFEQEIVYS DLLRALEDGG LEVLCGSSSA ISNRIYHTIH 180 TKVISYTSSS QQSSVPAYKA IFPHLPYQNI RLSFNIAGV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	24	33	KHKMIERKRR
2	30	35	RKRRKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LNH5	1e-52	B8LNH5_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	3e-18	bHLH family protein