PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00004974-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 325aa    MW: 36336.3 Da    PI: 6.2317
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00004974-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10135186255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +++ +++Er+RR+++N  f+ Lr+llP  +     +K    + +++Av+++++Lq
  PSME_00004974-RA 135 KKNRKMIERQRRKDMNGLFAMLRSLLPDeN---LRGKRALQDQVQEAVNHVCHLQ 186
                       57889***********************66...88888899*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.084133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-10134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-7135186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-9135190No hitNo description
SuperFamilySSF474598.24E-13135203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-6139191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGVPLIHEVN ASFIPMIACM YGDIGDGRSS SFVICPPNST NRPIAVELEG EFLSSNVVVN  60
QFHVERLPAS SIYPVLSPQA QQLEDPPTDN THQAASSHLA PSNIPPLMAT FCYKSSHQND  120
GQDWNRLPSS FSADKKNRKM IERQRRKDMN GLFAMLRSLL PDENLRGKRA LQDQVQEAVN  180
HVCHLQKKVE DLSTEIEKMK ANSDENAKVS LEGVRLSCNE KKCIKAPPIG GSDREFPTVK  240
IKSMGSTIQV CTNTFEHQIV YSDLLLALEE GGLEVLCASC SAINNRIFHT IHTKVSDLET  300
LNIDTLEQKL WHLIKTNYHT EDQEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH52e-77B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.17e-15bHLH family protein