PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005146-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 218aa    MW: 23581.7 Da    PI: 7.0174
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005146-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.4e-3971081101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+k+Cv+apyf +++ +++fa+vhk+FGasnv+kll ++p  er +a+ ++ yeA+ar+rdPvyG+v++i +lqqq+++l+a
  PSME_00005146-RA   7 PCGACKFLRRKCVKGCVFAPYFGSDEgAAHFAAVHKVFGASNVSKLLLHIPIPERCEAVVTISYEAQARLRDPVYGCVAHIYSLQQQVASLQA 99 
                       7*********************998879***************************************************************** PP

            DUF260  93 elallkeel 101
                       ela ++++l
  PSME_00005146-RA 100 ELAFVQAQL 108
                       ****99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1126108IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-387105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNGGGAPCGA CKFLRRKCVK GCVFAPYFGS DEGAAHFAAV HKVFGASNVS KLLLHIPIPE  60
RCEAVVTISY EAQARLRDPV YGCVAHIYSL QQQVASLQAE LAFVQAQLSN RVASGSTSTS  120
ANYPVMSTSS YSQHPHQVPA HLSMPHHVIP QPYNARGLCV KEENACGFAN SMDCEFSMSR  180
SDNSSPQMEA LQRCRNLEEI GEDGQELEAL AHALLLRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-3631087111LOB family transfactor Ramosa2.1
5ly0_B1e-3631087111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024381331.18e-61LOB domain-containing protein 29-like
RefseqXP_024381332.18e-61LOB domain-containing protein 29-like
SwissprotQ9SRV33e-55LBD20_ARATH; LOB domain-containing protein 20
TrEMBLD5A9D31e-113D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.11e-59(Physcomitrella patens)
STRINGXP_010274825.16e-60(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-57LOB domain-containing protein 20