PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005151-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 200aa    MW: 21751.9 Da    PI: 8.6363
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005151-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.11.1e-3615106191
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                       +C aCk+lrrkC+k+Cv+ap+f +++ +++f +vhk+FGasnv+kll ++p  er++a+ +++yeA+ar+rdPvyG+v++i +lqqq+++ +
  PSME_00005151-RA  15 PCGACKFLRRKCVKGCVFAPHFDSDEgAAHFSAVHKIFGASNVTKLLMHIPMPERSEAVFTITYEAQARLRDPVYGCVAHIYALQQQVASRA 106
                       7*********************998879***********************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.2714116IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3515105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
GCKFEPCTMS SGGAPCGACK FLRRKCVKGC VFAPHFDSDE GAAHFSAVHK IFGASNVTKL  60
LMHIPMPERS EAVFTITYEA QARLRDPVYG CVAHIYALQQ QVASRAGVRA STASKPRVSG  120
IRVDLRKLSC LSNCISSLHS SPCHVIQATS HTTLTSHIKE ENASDFANST EHKLSMFPSY  180
HSLPQMEVLQ RCRNPGENGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-348102497LOB family transfactor Ramosa2.1
5ly0_B2e-348102497LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D34e-73D5A9D3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.12e-48LOB domain-containing protein 20