PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005183-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 326aa    MW: 36808.4 Da    PI: 7.7655
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005183-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17172222255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr ++ +g+++AeIrd       +r+r +lg+f taeeAa a+++a+ k++g
  PSME_00005183-RA 172 HYRGVRKRP-WGKFAAEIRD----SarQRARLWLGTFTTAEEAALAYDQAAYKIRG 222
                       7********.**********....33456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-30171231IPR001471AP2/ERF domain
PfamPF008476.3E-13172222IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-21172231IPR016177DNA-binding domain
PROSITE profilePS5103223.499172230IPR001471AP2/ERF domain
SMARTSM003806.2E-36172236IPR001471AP2/ERF domain
CDDcd000182.25E-29172232No hitNo description
PRINTSPR003672.4E-10173184IPR001471AP2/ERF domain
PRINTSPR003672.4E-10196212IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSVLDRIRIH LLGDSDGQHF ESSFYQTGNC RSDPKNSIPE EQNFIRSALA CDSVADDLPE  60
TLVVSSSALS VSDSVTRHES LDWNKFPVSW EFRNYVSVTP PSFNPSLTST ASAKFPFGES  120
DSEDVIYLTP KEKMETEMKK EDIIFPVKKE QDVRQEAPTQ QPAAKKKNLG RHYRGVRKRP  180
WGKFAAEIRD SARQRARLWL GTFTTAEEAA LAYDQAAYKI RGSRALLNFP HLVKAENNNN  240
MCTNSKKTKG NGSNLTRKRE LEQGSSPGEV ESGRGCRVKL EDITREVDKM CRDMVDELLC  300
QRMATSPPTP NGNDMTDVNF WRMVCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28170230363ATERF1
3gcc_A1e-28170230363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI31e-92C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-21ethylene responsive element binding factor 1