PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005185-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 328aa    MW: 37477 Da    PI: 7.539
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005185-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-18149199255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd       k +r++lg+f taeeAa a+++a+ k++g
  PSME_00005185-RA 149 HYRGVRQRP-WGKYAAEIRD----SarKGARVWLGTFTTAEEAALAYDRAAYKMRG 199
                       7********.**********....33345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.9E-31148207IPR001471AP2/ERF domain
CDDcd000183.04E-30149207No hitNo description
PfamPF008471.6E-13149199IPR001471AP2/ERF domain
PROSITE profilePS5103223.446149207IPR001471AP2/ERF domain
SMARTSM003801.4E-37149213IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23149208IPR016177DNA-binding domain
PRINTSPR003678.3E-11150161IPR001471AP2/ERF domain
PRINTSPR003678.3E-11173189IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAMNYANQEF EYTELSDLDR IRCHLLDDFE SSSFLTGNLQ SETATIWSPE EENFIQTVLT  60
PDFVDDNRRE TQTETPTPAV QSSRPSLCVS VARHEPFHWE NFPVAWGFQN SVTPSIKTEA  120
GFSVKQEADV RKETGAAPPP NLKKNERRHY RGVRQRPWGK YAAEIRDSAR KGARVWLGTF  180
TTAEEAALAY DRAAYKMRGS RALLNFPLQL GGECTNPSTS TSEKVESNGE NNMSRKRERE  240
QVSNNGSEVE WDRECRLRLE LDNKNNKMDL GMVEELLCGK MATPPVTPKR EFKKAKVKMH  300
FKEEGSLLSH GEKQVEFKHI RAKINVKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-31148210466ATERF1
3gcc_A1e-31148210466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI31e-111C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-25ethylene responsive element binding factor 1