PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005187-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 413aa    MW: 46767.7 Da    PI: 8.3739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005187-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22.1e-18223273255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd       k +r++lg+f taeeAa a+++a+ k++g
  PSME_00005187-RA 223 HYRGVRQRP-WGKYAAEIRD----SarKGARVWLGTFTTAEEAALAYDRAAYKMRG 273
                       7********.**********....33345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.1E-31222281IPR001471AP2/ERF domain
CDDcd000181.14E-30223281No hitNo description
PfamPF008472.3E-13223273IPR001471AP2/ERF domain
SMARTSM003801.4E-37223287IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23223282IPR016177DNA-binding domain
PROSITE profilePS5103223.446223281IPR001471AP2/ERF domain
PRINTSPR003671.2E-10224235IPR001471AP2/ERF domain
PRINTSPR003671.2E-10247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MKPPKICYKY RTNFRQTYRG LIASTKMAMN YANQEFEYTE LSDLDRIRCH LLDDFESSSS  60
LTGNLQSETA TIWSPEEENF IQTVLTPDFV DDNRRETQTE TPIPAVKSSR PSLSVSVARH  120
EPFHWENFPV AWGFQNSVTP SVSPCLSAAC TKLPLDENDS EDMVLYGILK EAAHKGWKPR  180
TPKEEPVKEI KTEAGFSVKQ EADVRKETGA APPPNLKKNE RRHYRGVRQR PWGKYAAEIR  240
DSARKGARVW LGTFTTAEEA ALAYDRAAYK MRGSRALLNF PLQLGGECTN PSTSTSEKVE  300
SNGENNMSRK REREQVSSNG SEVEWDRDCR VRLELNNNNN KMDLGMVEEL LCGKMATPPV  360
TPSSIDMSYF NSFLSPHQFG GFLSPRPLMK NFNPPIALLS CHKQGGARIR LNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-31222284163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-31222284466ATERF1
3gcc_A8e-31222284466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI31e-160C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-40ethylene responsive element binding factor 1