PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00005188-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 427aa    MW: 48070.3 Da    PI: 5.3117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00005188-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18234284255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd       + +r++lg+f taeeAa a+++a+ k++g
  PSME_00005188-RA 234 HYRGVRQRP-WGKFAAEIRD----SarQGARVWLGTFNTAEEAALAYDRAAYKMRG 284
                       7********.**********....33334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31233293IPR001471AP2/ERF domain
PfamPF008473.5E-14234284IPR001471AP2/ERF domain
PROSITE profilePS5103223.354234292IPR001471AP2/ERF domain
CDDcd000182.15E-31234292No hitNo description
SuperFamilySSF541711.11E-22234293IPR016177DNA-binding domain
SMARTSM003807.5E-37234298IPR001471AP2/ERF domain
PRINTSPR003679.7E-11235246IPR001471AP2/ERF domain
PRINTSPR003679.7E-11258274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSMNCTNQEQ EGLRSRSFGF HAPNMSMNCT NQEQEPITEM SILDRIRSHL LGDFEGLYEE  60
SSFCVMTGNI PSDNSRSSSP EVESFIQSAL AGDCVDDNRR EMEMETEMPR PAVKPSRPLL  120
SVSVPRRESF DWEKFSVGRG IKNLACVTPP SVSPCLSAAW AKLPLNENDS EDMVLYGMLK  180
EAAKKGWMPI TPKEQTETET KKEADLFPVK KEPDVRQETL TQQPAVKKKN TGRHYRGVRQ  240
RPWGKFAAEI RDSARQGARV WLGTFNTAEE AALAYDRAAY KMRGSKALLN FPLHVALGNN  300
NNTCTAVEEP KSNGENFHEN LSSRKRERSP GDEVESGREC RGKLEEITRE TDIMSKGRVV  360
DELLCGRMTT PPLTPSGIDM SFSNFLCPGQ LMYIIPEMWS EEEIKFHGFI ALEKPFNISS  420
NGSEKEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-32232298369ATERF1
3gcc_A1e-32232298369ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLC0PQI31e-137C0PQI3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-38ethylene responsive element binding factor 1